Zunji Shi
2023/02/18
Personal profile:Zunji Shi currently works at State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, Center for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University. In 2015, he graduated from the State Key Laboratory of Agricultural Microbiology of Huazhong Agricultural University. During this period, Zunji was engaged in microbial metabolism research at Montana State University in the United States as a state-sponsored joint training of doctoral student. Later, Zunji was engaged in post-doctoral research in microbiome and metabolomics at Central China Normal University and South China University of Technology. Zunji served as a member of the Chinese Society of Microbiology and a director of the Gansu Society of Microbiology. Zunji served as editorial board member of Frontiers in Microbiology, and reviewer of Land Degradation & Development, Chemical Engineering Journal, Frontiers Cellular and Infection Microbiology, Frontiers in Plant Science, Pratacultural Science and Acta Prataculturae Sinica.
E-mail：[email protected]
Research field:Conduct systematic research in the field of microbes, metabolites and host interaction by using multi-omics technologies such as microbiome, metabolome and transcriptome and molecular biological methods.
Publications:
1. Keyi Fu; Xi Chen; Na Shou; Zilong Wang; Xuefeng Yuan; Dandan Wu; Qi Wang; Yanfen Cheng; Ning ling;Zunji Shi*; Swainsonine induces liver inflammation in mice via disturbance of gut microbiota and bile acid metabolism. Journal of agricultural and food chemistry, 2023,71: 1758−1767.
2. Xi Chen†; Zaiwei Wang†; Junhu Su; Huan Li; Jinbo Xiong; Keyi Fu; Zilong Wang; Xuefeng Yuan; Ziyue Shi; Xiumei Miao; Mei Yang; Yunfeng Yang;Zunji Shi*; Altitude-dependent Metabolite Biomarkers Reveal the Mechanism of Plateau Pika Adaptation to High Altitudes. Integrative Zoology, 2023.
3. Xiaoli Qi†; Keyi Fu†; Mingyuan Yue; Na Shou; Xuefeng Yuan; Xi Chen; Chunyu He; Yunfeng Yang*; andZunji Shi*; Kynurenic acid mediates bacteria-algae consortium in resisting environmental cadmium toxicity. Journal of Hazardous Materials, 2022, 444:130397.
4. Zunji Shi; Ce Zhang; Hehua Lei; Chuan Chen; Zheng Cao; Yuchen Song; Gui Chen; Fang Wu; Jinlin Zhou; Yujing Lu; Limin Zhang; Structural Insights into Amelioration Effects of Quercetin and Its Glycoside Derivatives on NAFLD in Mice by Modulating the Gut Microbiota and Host Metabolism. Journal of agricultural and food chemistry, 2022,70: 14732−14743.
5. Ling Lei †; Xuefeng Yuan†; Keyi Fu; Yuan Chen; Yijun Lu; Na Shou; Dandan Wu; Xi Chen; Jian Shi; Minjuan Zhang; Zhe Chen*; andZunji Shi*; Pseudotargeted metabolomics revealed the adaptive mechanism of Draba oreades Schrenk at high altitude. Frontiers in Plant Science, 2022, 13:1052640.
6. Fang Li; Xi Chen; Bo Yang; Yingjie Guang; Dandan Wu;Zunji Shi*and Yanzhong Li*; Transcriptome Analysis Revealed the Molecular Response Mechanism of High-Resistant and Low-Resistant Alfalfa Varieties to Verticillium Wilt. Frontiers in Plant Science, 2022, 13:931001.
7. Hu Liu; Tao Ran; Chengfu Zhang; Wenzhu Yang; Xiukun Wu; Allan Degen; Ruijun Long;Zunji Shi*and Jianwei Zhou*; Comparison of rumen bacterial communities between yaks (Bos grunniens) and Qaidam cattle (Bos taurus) fed a low protein diet with different energy levels. Frontiers in Microbiology, 2022, 13:982338.
8. Kaijian Sun; Xin Zhang; Xin Li; Xifeng Li; Shixing Su; Yunhao Luo; Hao Tian; Meiqin Zeng; Cheng Wang; Yugu Xie; Nan Zhang; Ying Cao; Zhaohua Zhu; Qianlin Ni; Wenchao Liu; Fangbo Xia; Xuying He;Zunji Shi*; Chuanzhi Duan*; Haitao Sun*; Plasma metabolic signatures for intracranial aneurysm and its rupture identified by pseudotargeted metabolomics. Clinica Chimica Acta, 2022, 538:36-45.
9. Zunji Shi; Xiaoli Qi; Xin-an Zeng; Yujing Lu; Jinlin Zhou; Kehui Cui; Limin Zhang; A newly isolated bacterium Comamonas sp. XL8 alleviates the toxicity of cadmium exposure in rice seedlings by accumulating cadmium. Journal of Hazardous Materials, 2021, 403: 123824.
10. Zunji Shi; Hehua Lei; Gui Chen; Peihong Yuan; Zheng Cao; Hooi-Leng Ser; Xuehang Zhu; Fang Wu; Caixiang Liu; Manyuan Dong; Yuchen Song; Yangyang Guo; Chuan Chen; Kexin Hu; Yifan Zhu; Xin-an Zeng; Jinlin Zhou; Yujing Lu; Andrew D. Patterson; Limin Zhang ; Impaired Intestinal Akkermansia muciniphila and Aryl Hydrocarbon Receptor Ligands Contribute to Nonalcoholic Fatty Liver Disease in Mice. mSystems, 2021, 6(1): e00985-20.
11. Zunji Shi; Gui Chen; Zheng Cao; Fang Wu; Hehua Lei; Chuan Chen; Yuchen Song; Caixiang Liu; Jinquan Li; Jinlin Zhou; Yujing Lu; Limin Zhang; Gut Microbiota and Its Metabolite Deoxycholic Acid Contribute to Sucralose Consumption-Induced Nonalcoholic Fatty Liver Disease, Journal of agricultural and food chemistry. 2021, 69: 3982-3991.
12. Hehua Lei; Yuchen Song; Manyuan Dong; Gui Chen; Zheng Cao; Fang Wu; Chuan Chen; Ce Zhang; Caixiang Liu;Zunji Shi*; and Limin Zhang*. Metabolomics Safety Assessments of Microcystin Exposure via Drinking Water in Rats. Ecotoxicology and Environmental Safety, 2021, 212: 111989.
13. Zunji Shi; Zhengfeng Zhang; Meng Yuan; Song Wang; Mei Yang; Qi Yao; Wanni Ba; Jin Zhao; Bo Xie; Characterization of a high cadmium accumulating soil bacterium, Cupriavidus sp. WS2. Chemosphere, 2020, 247: 125834.
14. Zunji Shi; Wenjuan Shen; Kai Yang; Ningning Zheng; Xiaofang Jiang; Limin Liu; Dandan Yang; Lizhi Zhang; Zhihui Ai* and Bo Xie*; Hexavalent chromium removal by a new composite system of dissimilatory iron reduction bacteriaAeromonas hydrophilaand nanoscale zero-valent iron. Chemical Engineering Journal, 2019, 362: 63-70.
15. Monika Tokmina-Lukaszewska†;Zunji Shi†; Brian Tripet; Timothy R McDermott; Valérie Copié; Brian Bothner*; Gejiao Wang*; Metabolic response ofAgrobacterium tumefaciens5A to arsenite. Environmental Microbiology, 2017, 19(2): 710-721.
16. Fang Wu;Zunji Shi; Hehua Lei; Gui Chen; Peihong Yuan; Zheng Cao; Chuan Chen; Xuehang Zhu; Caixiang Liu; Manyuan Dong; Yuchen Song; Yangyang Guo; Jinlin Zhou; Yujing Lu; Limin Zhang*; Short-Term Intake of Hesperetin-7‑O‑Glucoside Affects Fecal Microbiota and Host Metabolic Homeostasis in Mice.Journal of Agricultural and Food Chemistry, 2021, 69: 1478-1486.
17. Gang Wu; Leixin Ge; Na Zhao; Fei Liu;Zunji Shi; Ningning Zheng; Dan Zhou; Xingpeng Jiang; Larry Halverson; Bo Xie*;Environment dependent microbial co-occurrences across a cyanobacterial bloom in a freshwater lake.Environmental Microbiology, 2021, 23(1):327-339.
18. Manyuan Dong; Peihong Yuan; Yuchen Song; Hehua Lei; Gui Chen; Xuehang Zhu; Fang Wu; Chuan Chen; Caixiang Liu;Zunji Shi; Limin Zhang*;In vitroeffects of Triclocarban on adipogenesis in murine preadipocyte and human hepatocyte. Journal of Hazardous Materials, 2020, 399:122829.
19. Rachel A Rawle; Monika Tokmina-Lukaszewska;Zunji Shi; Yoon-Suk Kang; Brian P Tripet; Fang Dang; Gejiao Wang; Timothy R McDermott; Valerie Copie*; Brian Bothner*; Metabolic Responses to Arsenite Exposure Regulated through Histidine Kinases PhoR and AioS inAgrobacterium tumefaciens5A. Microorganisms, 2020, 8:1339.
20. Yoon-Suk Kang;Zunji Shi; Brian Bothner; Gejiao Wang; Timothy R McDermott*; Involvement of the Acr3 and DctA anti-porters in arsenite oxidation in Agrobacterium tumefaciens 5A.Environmental Microbiology,2014, 17(6):1950-1962.
21. Zunji Shi; Zhan Cao; Dong Qin; Wentao Zhu; Qian Wang; Mingshun Li; Gejiao Wang*; Correlation models between environmental factors and bacterial resistance to antimony and copper. PLoS ONE, 2013, 8(10): e78533.
22. Zunji Shi;Guosheng Luo; Gejiao Wang*;Cellulomonas carbonissp. nov., isolated from coal mine soil.Int J Syst Evol Microbiol, 2012, 62:2004-2010.
23. Fang Chen,Zunji Shi, Gejiao Wang*;Arenimonas metallisp. nov., isolated from iron mine. Int J Syst Evol Microbiol, 2012, 62:1744-1749.
24. Guosheng Luo;Zunji Shi; Gejiao Wang*;Lysobacter arsenitoxydanssp. nov., an arsenite- oxidizing bacterium isolated from iron mining soil. Int J Syst Evol Microbiol, 2012, 62:1659-1665.
25. Guosheng Luo;Zunji Shi;Hui Wang;Gejiao Wang*.Skermanella stibiiresistenssp. nov., a highly antimony-resistant bacterium isolated from coal mining soil, and emended description of the genus ofSkermanella.Int J Syst Evol Microbiol, 2012, 62:1271-1276.
26. Liqiong Li; Hongliang Liu;Zunji Shi; Gejiao Wang*;Sphingobium cupriresistenssp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genusSphingobium.Int J Syst Evol Microbiol, 2013, 63(Pt 2): 604-9.
